One additional thing you can do when locating the bridge to make sure the string lines are good is to do initial location with the usual techniques, centerline, diagonal distance from some fret around 12 to the tips of the wings for rotation, and distance from 12.''
After that lay a long straightedge along the fingerboard set in the distance from the edge of the first fret that you expect both your high and low E strings to be and locate the other end at the center of the corresponding bridge pin hole. Then measure the inset at the 12th fret. It's a good double check to be sure your string runs will be correctly spaced from the edge of the fretboard. Sometimes there is a surprise